IQ-TREE MPI multicore version 2.0.6 for Linux 64-bit built Aug  3 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    holy7c18501.rc.fas.harvard.edu (AVX512, FMA3, 188 GB RAM)
Command: /n/helmod/apps/centos7/MPI/gcc/9.3.0-fasrc01/openmpi/4.0.2-fasrc01/iqtree/2.0.6-fasrc02/bin/iqtree2-mpi -nt 32 -st AA -ninit 10 -bb 1500 -pre 25taxa -msub nuclear -s ../../matrices/Concatenated_25taxa/25taxa_concatenated.nex -m MFP+MERGE -rcluster 10 -madd LG4M,LG4X,LG+C10,LG+C20,LG+C30,LG+C40,LG+C50,LG+C60 -mrate G,R,E
Seed:    149140 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Fri Mar 12 19:38:28 2021
Kernel:  AVX+FMA - 32 threads (32 CPU cores detected)
MPI:     1 processes

Reading alignment file ../../matrices/Concatenated_25taxa/25taxa_concatenated.nex ... Nexus format detected
Alignment has 31 sequences with 47270 columns, 29513 distinct patterns
15545 parsimony-informative, 8272 singleton sites, 23453 constant sites
                                        Gap/Ambiguity  Composition  p-value
   1  Rhysida_longipes                         29.13%    passed     50.07%
   2  Scolopocryptops_sexspinosus              22.61%    passed     98.75%
   3  Notiphilides_grandis                     19.67%    passed     99.84%
   4  Strigamia_maritima_1                     16.30%    passed     98.92%
   5  Eupolybothrus_fasciatus_SRR3485981       19.01%    passed     30.08%
   6  Alipes_grandidieri                       19.95%    passed     85.55%
   7  Craterostigmus_tasmanianus               33.59%    passed     49.85%
   8  Theatops_spinicaudus                     25.82%    passed     89.37%
   9  Hydroschendyla_submarina                 29.04%    passed     82.34%
  10  Scolopendropsis_bahiensis                14.53%    passed     63.27%
  11  Mimops_sp1                               27.93%    passed     95.98%
  12  Mimops_sp2                               60.26%    failed      0.00%
  13  Cryptops_hortensis                       12.47%    passed     92.77%
  14  Pauropus_huxleyi                         31.50%    failed      0.27%
  15  Himantarium_gabrielis                    19.69%    passed     99.69%
  16  Glomeris_marginata                       37.15%    passed     58.43%
  17  Henia_brevis                             22.28%    passed     83.90%
  18  Scolopendra_cingulata_SRR1653235          9.61%    passed     66.19%
  19  Akymnopellis_chilensis                   30.46%    passed     72.86%
  20  Anopsobius_giribeti                      21.92%    passed     57.71%
  21  Scutigerina_weberi                       24.87%    passed     99.60%
  22  Sphendononema_guildingii                 22.23%    passed     52.30%
  23  Scolopocryptops_rubiginosus_SRR1653236    9.41%    passed     99.46%
  24  Scutigera_coleoptrata                    28.75%    passed     78.33%
  25  Stenotaenia_linearis                     21.14%    passed     82.69%
  26  Scolopendra_subspinipes_SRR6377863       12.34%    passed     37.76%
  27  Lithobius_atkinsoni                      35.14%    passed     51.29%
  28  Scutigerella                             46.08%    failed      0.65%
  29  Newportia_adisi                          22.19%    passed     96.21%
  30  Mecistocephalus_guildingii               21.86%    passed     97.09%
  31  Paralamyctes_validus                     26.12%    passed     48.84%
WARNING: 1 sequences contain more than 50% gaps/ambiguity
****  TOTAL                                    24.94%  3 sequences failed composition chi2 test (p-value<5%; df=19)


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.180 seconds
Perform fast likelihood tree search using LG+I+G model...
Estimate model parameters (epsilon = 5.000)
Perform nearest neighbor interchange...
Estimate model parameters (epsilon = 1.000)
1. Initial log-likelihood: -660399.433
2. Current log-likelihood: -660396.170
3. Current log-likelihood: -660393.855
4. Current log-likelihood: -660392.089
5. Current log-likelihood: -660390.724
6. Current log-likelihood: -660389.680
Optimal log-likelihood: -660388.717
Proportion of invariable sites: 0.294
Gamma shape alpha: 0.623
Parameters optimization took 6 rounds (2.381 sec)
Time for fast ML tree search: 6.459 seconds

NOTE: ModelFinder requires 1583 MB RAM!
ModelFinder will test up to 206 protein models (sample size: 47270) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  LG+G4         661552.281   60  1323224.562  1323224.717  1323750.379
  2  LG+R2         666007.730   61  1332137.460  1332137.620  1332672.041
  3  LG+R3         660092.895   63  1320311.790  1320311.961  1320863.898
  4  LG+R4         659238.191   65  1318606.382  1318606.563  1319176.018
  5  LG+R5         659114.182   67  1318362.365  1318362.558  1318949.528
  6  LG+R6         659090.589   69  1318319.178  1318319.383  1318923.869
  7  LG+R7         659087.704   71  1318317.408  1318317.625  1318939.626
 11  LG            720786.572   59  1441691.145  1441691.295  1442208.199
 12  LG+F+G4       661274.457   79  1322706.914  1322707.182  1323399.241
 13  LG+F+R2       665697.620   80  1331555.239  1331555.514  1332256.330
 14  LG+F+R3       659818.618   82  1319801.237  1319801.525  1320519.855
 15  LG+F+R4       658971.562   84  1318111.125  1318111.428  1318847.270
 16  LG+F+R5       658846.776   86  1317865.552  1317865.870  1318619.225
 17  LG+F+R6       658823.287   88  1317822.575  1317822.907  1318593.774
 18  LG+F+R7       658820.647   90  1317821.294  1317821.641  1318610.021
 22  LG+F          720440.335   78  1441036.670  1441036.931  1441720.233
 23  WAG+G4        664583.092   60  1329286.184  1329286.339  1329812.002
 24  WAG+R2        668367.494   61  1336856.988  1336857.149  1337391.570
 25  WAG+R3        663259.717   63  1326645.433  1326645.604  1327197.542
 26  WAG+R4        662557.889   65  1325245.778  1325245.960  1325815.414
 27  WAG+R5        662465.589   67  1325065.178  1325065.371  1325652.342
 28  WAG+R6        662451.961   69  1325041.923  1325042.127  1325646.613
WARNING: Log-likelihood -662457 of WAG+R7 worse than WAG+R6 -662452
 29  WAG+R7        662457.074   71  1325056.149  1325056.365  1325678.366
 33  WAG           720706.023   59  1441530.047  1441530.197  1442047.101
 34  WAG+F+G4      664784.630   79  1329727.259  1329727.527  1330419.586
 35  WAG+F+R2      668638.166   80  1337436.331  1337436.606  1338137.422
 36  WAG+F+R3      663457.133   82  1327078.266  1327078.555  1327796.884
 37  WAG+F+R4      662748.208   84  1325664.416  1325664.719  1326400.561
 38  WAG+F+R5      662651.362   86  1325474.724  1325475.041  1326228.396
 39  WAG+F+R6      662637.627   88  1325451.254  1325451.586  1326222.454
WARNING: Log-likelihood -662642 of WAG+F+R7 worse than WAG+F+R6 -662638
 40  WAG+F+R7      662641.845   90  1325463.690  1325464.038  1326252.417
 44  WAG+F         721318.194   78  1442792.388  1442792.649  1443475.951
 45  JTT+G4        664480.338   60  1329080.676  1329080.831  1329606.494
 46  JTT+R2        668658.606   61  1337439.212  1337439.373  1337973.794
 47  JTT+R3        662990.239   63  1326106.478  1326106.649  1326658.587
 48  JTT+R4        662236.485   65  1324602.971  1324603.152  1325172.607
 49  JTT+R5        662123.357   67  1324380.713  1324380.906  1324967.877
 50  JTT+R6        662113.492   69  1324364.985  1324365.189  1324969.675
 55  JTT           722765.143   59  1445648.286  1445648.436  1446165.340
 56  JTT+F+G4      664066.531   79  1328291.061  1328291.329  1328983.388
 57  JTT+F+R2      668297.445   80  1336754.890  1336755.165  1337455.981
 58  JTT+F+R3      662581.508   82  1325327.017  1325327.305  1326045.635
 59  JTT+F+R4      661824.335   84  1323816.669  1323816.972  1324552.814
 60  JTT+F+R5      661709.639   86  1323591.277  1323591.594  1324344.950
 61  JTT+F+R6      661700.284   88  1323576.568  1323576.900  1324347.767
 66  JTT+F         722630.542   78  1445417.084  1445417.345  1446100.647
 67  JTTDCMut+G4   664371.349   60  1328862.698  1328862.853  1329388.516
 68  JTTDCMut+R2   668542.023   61  1337206.046  1337206.206  1337740.627
 69  JTTDCMut+R3   662879.585   63  1325885.170  1325885.340  1326437.278
 70  JTTDCMut+R4   662124.728   65  1324379.457  1324379.638  1324949.093
 71  JTTDCMut+R5   662012.914   67  1324159.827  1324160.020  1324746.990
 72  JTTDCMut+R6   662002.914   69  1324143.829  1324144.033  1324748.519
 77  JTTDCMut      722553.124   59  1445224.247  1445224.397  1445741.301
 78  JTTDCMut+F+G4 663941.232   79  1328040.465  1328040.733  1328732.792
 79  JTTDCMut+F+R2 668171.357   80  1336502.715  1336502.989  1337203.805
 80  JTTDCMut+F+R3 662454.327   82  1325072.654  1325072.943  1325791.272
 81  JTTDCMut+F+R4 661694.080   84  1323556.160  1323556.462  1324292.305
 82  JTTDCMut+F+R5 661579.595   86  1323331.189  1323331.506  1324084.861
 83  JTTDCMut+F+R6 661570.151   88  1323316.303  1323316.635  1324087.502
 88  JTTDCMut+F    722432.178   78  1445020.356  1445020.617  1445703.920
 89  DCMut+G4      668447.651   60  1337015.303  1337015.458  1337541.121
 90  DCMut+R2      673081.586   61  1346285.173  1346285.333  1346819.754
 91  DCMut+R3      666992.770   63  1334111.540  1334111.711  1334663.649
 92  DCMut+R4      666053.962   65  1332237.924  1332238.106  1332807.560
 93  DCMut+R5      665859.574   67  1331853.149  1331853.342  1332440.312
 94  DCMut+R6      665840.550   69  1331819.099  1331819.304  1332423.790
WARNING: Log-likelihood -665843 of DCMut+R7 worse than DCMut+R6 -665841
 95  DCMut+R7      665843.443   71  1331828.886  1331829.103  1332451.104
 99  DCMut         727471.597   59  1455061.194  1455061.344  1455578.248
100  DCMut+F+G4    666852.136   79  1333862.271  1333862.539  1334554.598
101  DCMut+F+R2    671557.063   80  1343274.126  1343274.401  1343975.217
102  DCMut+F+R3    665391.221   82  1330946.443  1330946.731  1331665.060
103  DCMut+F+R4    664440.072   84  1329048.144  1329048.446  1329784.289
104  DCMut+F+R5    664240.360   86  1328652.719  1328653.037  1329406.392
105  DCMut+F+R6    664221.646   88  1328619.292  1328619.624  1329390.491
WARNING: Log-likelihood -664224 of DCMut+F+R7 worse than DCMut+F+R6 -664222
106  DCMut+F+R7    664223.967   90  1328627.934  1328628.281  1329416.660
110  DCMut+F       726255.676   78  1452667.352  1452667.613  1453350.915
111  VT+G4         666576.833   60  1333273.667  1333273.822  1333799.484
112  VT+R2         670086.283   61  1340294.565  1340294.726  1340829.147
113  VT+R3         665325.296   63  1330776.593  1330776.764  1331328.702
114  VT+R4         664751.052   65  1329632.104  1329632.286  1330201.741
115  VT+R5         664682.943   67  1329499.887  1329500.080  1330087.050
116  VT+R6         664675.041   69  1329488.082  1329488.287  1330092.773
121  VT            721759.647   59  1443637.294  1443637.444  1444154.349
122  VT+F+G4       666722.032   79  1333602.064  1333602.332  1334294.391
123  VT+F+R2       670224.587   80  1340609.175  1340609.450  1341310.265
124  VT+F+R3       665479.104   82  1331122.208  1331122.497  1331840.826
125  VT+F+R4       664916.487   84  1330000.974  1330001.276  1330737.119
126  VT+F+R5       664848.793   86  1329869.585  1329869.902  1330623.257
127  VT+F+R6       664840.653   88  1329857.305  1329857.637  1330628.505
132  VT+F          721959.957   78  1444075.913  1444076.175  1444759.477
133  PMB+G4        672528.857   60  1345177.715  1345177.870  1345703.533
134  PMB+R2        676057.058   61  1352236.115  1352236.276  1352770.697
135  PMB+R3        671353.899   63  1342833.798  1342833.969  1343385.906
136  PMB+R4        670803.913   65  1341737.826  1341738.008  1342307.462
137  PMB+R5        670743.370   67  1341620.740  1341620.933  1342207.903
138  PMB+R6        670736.360   69  1341610.720  1341610.925  1342215.411
143  PMB           727733.220   59  1455584.441  1455584.591  1456101.495
144  PMB+F+G4      671973.232   79  1344104.464  1344104.732  1344796.791
145  PMB+F+R2      675495.291   80  1351150.582  1351150.856  1351851.672
146  PMB+F+R3      670768.345   82  1341700.690  1341700.978  1342419.308
147  PMB+F+R4      670211.200   84  1340590.400  1340590.702  1341326.545
148  PMB+F+R5      670145.855   86  1340463.711  1340464.028  1341217.383
149  PMB+F+R6      670136.605   88  1340449.210  1340449.542  1341220.409
154  PMB+F         727351.922   78  1454859.844  1454860.106  1455543.408
155  Blosum62+G4   672141.794   60  1344403.588  1344403.743  1344929.406
156  Blosum62+R2   675740.610   61  1351603.219  1351603.380  1352137.801
157  Blosum62+R3   670930.575   63  1341987.150  1341987.321  1342539.259
158  Blosum62+R4   670355.757   65  1340841.513  1340841.695  1341411.149
159  Blosum62+R5   670289.473   67  1340712.945  1340713.138  1341300.108
160  Blosum62+R6   670280.470   69  1340698.940  1340699.144  1341303.630
165  Blosum62      727393.413   59  1454904.825  1454904.975  1455421.879
166  Blosum62+F+G4 672142.462   79  1344442.923  1344443.191  1345135.250
167  Blosum62+F+R2 675718.449   80  1351596.897  1351597.172  1352297.988
168  Blosum62+F+R3 670905.038   82  1341974.075  1341974.364  1342692.693
169  Blosum62+F+R4 670324.262   84  1340816.524  1340816.826  1341552.669
170  Blosum62+F+R5 670253.366   86  1340678.733  1340679.050  1341432.405
171  Blosum62+F+R6 670241.769   88  1340659.538  1340659.870  1341430.738
WARNING: Log-likelihood -670247 of Blosum62+F+R7 worse than Blosum62+F+R6 -670242
172  Blosum62+F+R7 670247.385   90  1340674.770  1340675.117  1341463.497
176  Blosum62+F    727485.764   78  1455127.527  1455127.789  1455811.091
177  Dayhoff+G4    668384.905   60  1336889.810  1336889.965  1337415.627
178  Dayhoff+R2    673031.312   61  1346184.623  1346184.783  1346719.205
179  Dayhoff+R3    666924.056   63  1333974.112  1333974.283  1334526.221
180  Dayhoff+R4    665982.346   65  1332094.692  1332094.874  1332664.328
181  Dayhoff+R5    665787.129   67  1331708.258  1331708.451  1332295.421
182  Dayhoff+R6    665768.607   69  1331675.214  1331675.418  1332279.904
WARNING: Log-likelihood -665771 of Dayhoff+R7 worse than Dayhoff+R6 -665769
183  Dayhoff+R7    665771.464   71  1331684.927  1331685.144  1332307.145
187  Dayhoff       727473.333   59  1455064.665  1455064.815  1455581.720
188  Dayhoff+F+G4  666800.899   79  1333759.799  1333760.067  1334452.126
189  Dayhoff+F+R2  671518.542   80  1343197.084  1343197.359  1343898.174
190  Dayhoff+F+R3  665334.236   82  1330832.472  1330832.760  1331551.089
191  Dayhoff+F+R4  664380.205   84  1328928.411  1328928.714  1329664.556
192  Dayhoff+F+R5  664179.671   86  1328531.342  1328531.659  1329285.014
193  Dayhoff+F+R6  664161.125   88  1328498.251  1328498.583  1329269.450
WARNING: Log-likelihood -664164 of Dayhoff+F+R7 worse than Dayhoff+F+R6 -664161
194  Dayhoff+F+R7  664163.805   90  1328507.611  1328507.958  1329296.338
198  Dayhoff+F     726272.079   78  1452700.157  1452700.418  1453383.720
Model LG4M is alias for MIX{LG4M1,LG4M2,LG4M3,LG4M4}*G4
199  LG4M          664063.747   60  1328247.493  1328247.648  1328773.311
Model LG4X is alias for MIX{LG4X1,LG4X2,LG4X3,LG4X4}*R4
200  LG4X          660087.412   65  1320304.823  1320305.005  1320874.459
Model LG+C10 is alias for LG+POISSON+G+FMIX{C10pi1:1:0.1191344178,C10pi2:1:0.0874372456,C10pi3:1:0.1037105070,C10pi4:1:0.0922584809,C10pi5:1:0.1070492801,C10pi6:1:0.1329945166,C10pi7:1:0.0538028458,C10pi8:1:0.0691986212,C10pi9:1:0.1319937434,C10pi10:1:0.1024203429}
201  LG+C10        658500.798   60  1317121.596  1317121.751  1317647.414
Model LG+C20 is alias for LG+POISSON+G+FMIX{C20pi1:1:0.0559910600,C20pi2:1:0.0514824870,C20pi3:1:0.0812922124,C20pi4:1:0.0721976867,C20pi5:1:0.0556718858,C20pi6:1:0.0331003080,C20pi7:1:0.0589501763,C20pi8:1:0.0263756889,C20pi9:1:0.0307584220,C20pi10:1:0.0376701125,C20pi11:1:0.0303058290,C20pi12:1:0.0808775576,C20pi13:1:0.0263349134,C20pi14:1:0.0579101455,C20pi15:1:0.0371248064,C20pi16:1:0.0586867766,C20pi17:1:0.0561479138,C20pi18:1:0.0349810886,C20pi19:1:0.0544937394,C20pi20:1:0.0596471901}
202  LG+C20        654611.658   60  1309343.316  1309343.471  1309869.134
Model LG+C30 is alias for LG+POISSON+G+FMIX{C30pi1:1:0.0095783264,C30pi2:1:0.0248476365,C30pi3:1:0.0636309366,C30pi4:1:0.0537939225,C30pi5:1:0.0295885587,C30pi6:1:0.0117587936,C30pi7:1:0.0132013428,C30pi8:1:0.0236868805,C30pi9:1:0.0261687659,C30pi10:1:0.0239821974,C30pi11:1:0.0257100906,C30pi12:1:0.0465072425,C30pi13:1:0.0546794546,C30pi14:1:0.0536085131,C30pi15:1:0.0270622670,C30pi16:1:0.0403913593,C30pi17:1:0.0474212700,C30pi18:1:0.0458816478,C30pi19:1:0.0214036510,C30pi20:1:0.0290385981,C30pi21:1:0.0123391793,C30pi22:1:0.0569350229,C30pi23:1:0.0419687568,C30pi24:1:0.0339027062,C30pi25:1:0.0388777376,C30pi26:1:0.0196343766,C30pi27:1:0.0233086174,C30pi28:1:0.0622722654,C30pi29:1:0.0184803385,C30pi30:1:0.0203395454}
203  LG+C30        654232.004   60  1308584.007  1308584.163  1309109.825
Model LG+C40 is alias for LG+POISSON+G+FMIX{C40pi1:1:0.0223853788,C40pi2:1:0.0338891820,C40pi3:1:0.0577169375,C40pi4:1:0.0252416233,C40pi5:1:0.0108607921,C40pi6:1:0.0462373793,C40pi7:1:0.0102293175,C40pi8:1:0.0147523625,C40pi9:1:0.0143161352,C40pi10:1:0.0182302541,C40pi11:1:0.0204025079,C40pi12:1:0.0425505156,C40pi13:1:0.0248627269,C40pi14:1:0.0105892988,C40pi15:1:0.0188238725,C40pi16:1:0.0086663445,C40pi17:1:0.0148496147,C40pi18:1:0.0343037402,C40pi19:1:0.0225335203,C40pi20:1:0.0174068578,C40pi21:1:0.0112207827,C40pi22:1:0.0443532245,C40pi23:1:0.0392573370,C40pi24:1:0.0196756555,C40pi25:1:0.0287690328,C40pi26:1:0.0114441177,C40pi27:1:0.0112338740,C40pi28:1:0.0582694099,C40pi29:1:0.0444272279,C40pi30:1:0.0112010942,C40pi31:1:0.0145176111,C40pi32:1:0.0114629026,C40pi33:1:0.0239628061,C40pi34:1:0.0266266492,C40pi35:1:0.0481201159,C40pi36:1:0.0371147423,C40pi37:1:0.0160476688,C40pi38:1:0.0237249267,C40pi39:1:0.0235226203,C40pi40:1:0.0261998398}
204  LG+C40        653741.566   60  1307603.131  1307603.286  1308128.949
Model LG+C50 is alias for LG+POISSON+G+FMIX{C50pi1:1:0.0164297003,C50pi2:1:0.0273175755,C50pi3:1:0.0460247610,C50pi4:1:0.0084864734,C50pi5:1:0.0125389252,C50pi6:1:0.0343549036,C50pi7:1:0.0130241102,C50pi8:1:0.0094755681,C50pi9:1:0.0190040551,C50pi10:1:0.0151902354,C50pi11:1:0.0320534760,C50pi12:1:0.0210059850,C50pi13:1:0.0237408547,C50pi14:1:0.0239841203,C50pi15:1:0.0213748021,C50pi16:1:0.0210717705,C50pi17:1:0.0050241805,C50pi18:1:0.0166262276,C50pi19:1:0.0143945956,C50pi20:1:0.0104391130,C50pi21:1:0.0107628277,C50pi22:1:0.0148818171,C50pi23:1:0.0321480239,C50pi24:1:0.0145477978,C50pi25:1:0.0332355807,C50pi26:1:0.0143190281,C50pi27:1:0.0234478734,C50pi28:1:0.0183044983,C50pi29:1:0.0403269452,C50pi30:1:0.0135629530,C50pi31:1:0.0091880799,C50pi32:1:0.0158270022,C50pi33:1:0.0121019379,C50pi34:1:0.0353560982,C50pi35:1:0.0404495617,C50pi36:1:0.0104569232,C50pi37:1:0.0146187792,C50pi38:1:0.0093984095,C50pi39:1:0.0146773809,C50pi40:1:0.0201635562,C50pi41:1:0.0255640273,C50pi42:1:0.0039486842,C50pi43:1:0.0393652608,C50pi44:1:0.0056415419,C50pi45:1:0.0382833580,C50pi46:1:0.0039735086,C50pi47:1:0.0140269355,C50pi48:1:0.0476703673,C50pi49:1:0.0204062788,C50pi50:1:0.0117835304}
205  LG+C50        653453.363   60  1307026.726  1307026.881  1307552.544
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}
206  LG+C60        653184.974   60  1306489.949  1306490.104  1307015.766
Akaike Information Criterion:           LG+C60
Corrected Akaike Information Criterion: LG+C60
Bayesian Information Criterion:         LG+C60
Best-fit model: LG+C60 chosen according to BIC

All model information printed to 25taxa.model.gz
CPU time for ModelFinder: 138347.937 seconds (38h:25m:47s)
Wall-clock time for ModelFinder: 4364.016 seconds (1h:12m:44s)
Generating 1500 samples for ultrafast bootstrap (seed: 149140)...
Model LG+C60 is alias for LG+POISSON+G+FMIX{C60pi1:1:0.0169698865,C60pi2:1:0.0211683374,C60pi3:1:0.0276589079,C60pi4:1:0.0065675964,C60pi5:1:0.0141221416,C60pi6:1:0.0068774834,C60pi7:1:0.0146909701,C60pi8:1:0.0067225777,C60pi9:1:0.0018396660,C60pi10:1:0.0102547197,C60pi11:1:0.0230896163,C60pi12:1:0.0057941033,C60pi13:1:0.0125394534,C60pi14:1:0.0204526478,C60pi15:1:0.0070629602,C60pi16:1:0.0117982741,C60pi17:1:0.0068334668,C60pi18:1:0.0433775839,C60pi19:1:0.0318278731,C60pi20:1:0.0222546108,C60pi21:1:0.0102264969,C60pi22:1:0.0150545891,C60pi23:1:0.0134159878,C60pi24:1:0.0148552065,C60pi25:1:0.0239111516,C60pi26:1:0.0128776278,C60pi27:1:0.0222318842,C60pi28:1:0.0247444742,C60pi29:1:0.0214274810,C60pi30:1:0.0115001882,C60pi31:1:0.0076017389,C60pi32:1:0.0130258568,C60pi33:1:0.0093701965,C60pi34:1:0.0467194264,C60pi35:1:0.0441940314,C60pi36:1:0.0322263154,C60pi37:1:0.0402999891,C60pi38:1:0.0150234227,C60pi39:1:0.0104589903,C60pi40:1:0.0214742395,C60pi41:1:0.0154957836,C60pi42:1:0.0101789953,C60pi43:1:0.0227980379,C60pi44:1:0.0123204539,C60pi45:1:0.0066777583,C60pi46:1:0.0004150083,C60pi47:1:0.0344385130,C60pi48:1:0.0113663379,C60pi49:1:0.0127143049,C60pi50:1:0.0124323741,C60pi51:1:0.0262124415,C60pi52:1:0.0064994957,C60pi53:1:0.0103203293,C60pi54:1:0.0142463512,C60pi55:1:0.0215600067,C60pi56:1:0.0199150700,C60pi57:1:0.0038964200,C60pi58:1:0.0113448855,C60pi59:1:0.0128595846,C60pi60:1:0.0117656776}

NOTE: 34119 MB RAM (33 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -653184.974
Optimal log-likelihood: -653184.969
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.282
Parameters optimization took 1 rounds (22.305 sec)
Computing ML distances based on estimated model parameters... 0.445 sec
Computing BIONJ tree...
0.002 seconds
Log-likelihood of BIONJ tree: -653173.816
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 8 parsimony trees... 1.664 second
Computing log-likelihood of 8 initial trees ... 71.554 seconds
Current best score: -653173.816

Do NNI search on 10 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -653166.667
Iteration 10 / LogL: -653179.931 / Time: 0h:28m:42s
Finish initializing candidate tree set (11)
Current best tree score: -653166.667 / CPU time: 1592.380
Number of iterations: 10
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 20 / LogL: -653166.687 / Time: 1h:1m:33s
Iteration 30 / LogL: -653203.149 / Time: 1h:28m:16s (3h:36m:8s left)
Iteration 40 / LogL: -653166.908 / Time: 2h:5m:21s (3h:16m:4s left)
Iteration 50 / LogL: -653167.812 / Time: 2h:33m:2s (2h:39m:17s left)
Log-likelihood cutoff on original alignment: -653252.468
Iteration 60 / LogL: -653168.865 / Time: 3h:6m:24s (2h:9m:32s left)
Iteration 70 / LogL: -653168.041 / Time: 3h:33m:27s (1h:35m:54s left)
Iteration 80 / LogL: -653170.559 / Time: 4h:4m:0s (1h:4m:51s left)
Iteration 90 / LogL: -653168.315 / Time: 4h:35m:6s (0h:34m:0s left)
Iteration 100 / LogL: -653166.984 / Time: 5h:6m:16s (0h:3m:5s left)
Log-likelihood cutoff on original alignment: -653252.468
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 1.000
Total number of trees received: 0
Total number of trees sent: 0
Total number of NNI searches done by myself: 103
TREE SEARCH COMPLETED AFTER 102 ITERATIONS / Time: 5h:11m:16s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -653166.667
Optimal log-likelihood: -653166.667
Mixture weights: 0.017 0.021 0.028 0.007 0.014 0.007 0.015 0.007 0.002 0.010 0.023 0.006 0.013 0.020 0.007 0.012 0.007 0.043 0.032 0.022 0.010 0.015 0.013 0.015 0.024 0.013 0.022 0.025 0.021 0.011 0.008 0.013 0.009 0.047 0.044 0.032 0.040 0.015 0.010 0.021 0.015 0.010 0.023 0.012 0.007 0.001 0.034 0.011 0.013 0.012 0.026 0.006 0.010 0.014 0.022 0.020 0.004 0.011 0.013 0.012
Gamma shape alpha: 0.282
Parameters optimization took 1 rounds (21.728 sec)
BEST SCORE FOUND : -653166.667
Creating bootstrap support values...
Split supports printed to NEXUS file 25taxa.splits.nex
Total tree length: 7.644

Total number of iterations: 102
CPU time used for tree search: 576195.833 sec (160h:3m:15s)
Wall-clock time used for tree search: 18546.483 sec (5h:9m:6s)
Total CPU time used: 580906.692 sec (161h:21m:46s)
Total wall-clock time used: 18698.410 sec (5h:11m:38s)

Computing bootstrap consensus tree...
Reading input file 25taxa.splits.nex...
31 taxa and 77 splits.
Consensus tree written to 25taxa.contree
Reading input trees file 25taxa.contree
Log-likelihood of consensus tree: -653166.667

Analysis results written to: 
  IQ-TREE report:                25taxa.iqtree
  Maximum-likelihood tree:       25taxa.treefile
  Likelihood distances:          25taxa.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          25taxa.splits.nex
  Consensus tree:                25taxa.contree
  Screen log file:               25taxa.log

Date and Time: Sat Mar 13 02:04:36 2021
